EnhancerDB
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  3. rs543369333[chr5:171540225]
Enhancers that have rs543369333[chr5:171540225]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171526400 171541439 enh8877
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Lung Heart
Transcript factors that have rs543369333[chr5:171540225]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171540040 171540361 RUNX3 UCSC Txn Factor no Conserved 108537427
chr5 171540071 171540387 EBF1 UCSC Txn Factor no Conserved 108537428
chr5 171540218 171540233 ZIC3 JASPAR yes 67763788
chr5 171540218 171540233 ZIC4 JASPAR yes 67763789
chr5 171540218 171540234 GLIS1 JASPAR yes 67763790
chr5 171540219 171540233 GLIS2 JASPAR yes 67763791
chr5 171540219 171540233 GLIS3 JASPAR yes 67763792
chr5 171540219 171540233 ZIC1 JASPAR yes 67763793
chr5 171540221 171540231 ZNF740 JASPAR yes 67763794
chr5 171540222 171540232 SP1 JASPAR yes 67763795
chr5 171540222 171540232 ZNF740 JASPAR yes 67763796
chr5 171540223 171540233 ZNF740 JASPAR yes 67763797
chr5 171540224 171540234 SP1 JASPAR yes 67763798
chr5 171540224 171540234 ZNF740 JASPAR yes 67763799
Genes associated with rs543369333[chr5:171540225], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More