EnhancerDB
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  3. rs543942580[chr1:42354628]
Enhancers that have rs543942580[chr1:42354628]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42354251 42354647 vista1366
VISTA
chr1 42354446 42370305 enh11796
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Thymus Heart
Transcript factors that have rs543942580[chr1:42354628]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42354460 42354937 TCF7L2 GTRD no Colon (HCT116) 21325361
chr1 42354614 42354629 RUNX2 JASPAR yes 28433991
chr1 42354614 42354629 RUNX2 JASPAR yes 118280612
chr1 42354620 42354640 RREB1 JASPAR yes 28433993
chr1 42354620 42354640 RREB1 JASPAR yes 118280614
chr1 42354623 42354638 RUNX2 JASPAR yes 28433994
chr1 42354623 42354638 RUNX2 JASPAR yes 118280615
chr1 42354628 42354648 RREB1 JASPAR yes 28433995
chr1 42354628 42354648 RREB1 JASPAR yes 118280616
Genes associated with rs543942580[chr1:42354628], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More