EnhancerDB
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  3. rs546857580[chr5:171571159]
Enhancers that have rs546857580[chr5:171571159]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs546857580[chr5:171571159]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171571151 171571161 SP1 JASPAR yes 67767355
chr5 171571152 171571162 SP1 JASPAR yes 67767356
chr5 171571157 171571168 NFKB1 JASPAR yes 67767358
chr5 171571157 171571170 NFKB1 JASPAR yes 67767359
chr5 171571157 171571170 NFKB2 JASPAR yes 67767360
chr5 171571158 171571168 NFKB1 JASPAR yes 67767361
chr5 171571158 171571168 RELA JASPAR yes 67767362
chr5 171571158 171571169 NFKB1 JASPAR yes 67767363
Genes associated with rs546857580[chr5:171571159], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More