EnhancerDB
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  3. rs548320239[chr5:171566513]
Enhancers that have rs548320239[chr5:171566513]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs548320239[chr5:171566513]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171566496 171566517 IRF1 JASPAR yes 67766642
chr5 171566497 171566518 IRF1 JASPAR yes 67766644
chr5 171566498 171566513 FOXP1 JASPAR yes 67766645
chr5 171566498 171566519 IRF1 JASPAR yes 67766646
chr5 171566499 171566514 FOXP1 JASPAR yes 67766647
chr5 171566501 171566516 FOXP1 JASPAR yes 67766648
chr5 171566502 171566523 IRF1 JASPAR yes 67766649
chr5 171566503 171566518 FOXP1 JASPAR yes 67766650
chr5 171566503 171566524 IRF1 JASPAR yes 67766651
chr5 171566507 171566522 STAT2 JASPAR yes 67766652
chr5 171566508 171566523 FOXP1 JASPAR yes 67766653
chr5 171566509 171566530 IRF1 JASPAR yes 67766654
chr5 171566513 171566528 PRDM1 JASPAR yes 67766655
Genes associated with rs548320239[chr5:171566513], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More