EnhancerDB
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Enhancers that have rs548340357[chr12:125124252]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125108500 125127069 enh15092
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548340357[chr12:125124252]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125123945 125124449 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21581513
chr12 125123951 125124291 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21581514
chr12 125123977 125125000 ZNF143 GTRD no Epithelial (MCF-7) 21581515
chr12 125123977 125125000 ZNF143 GTRD no Epithelial (MCF-7) 108069232
chr12 125124090 125125216 ZNF143 GTRD no Epithelial (MCF-7) 21581516
chr12 125124090 125125216 ZNF143 GTRD no Epithelial (MCF-7) 108069233
chr12 125124095 125125017 ZNF143 GTRD no Epithelial (MCF-7) 21581517
chr12 125124095 125125017 ZNF143 GTRD no Epithelial (MCF-7) 108069234
chr12 125124191 125125004 ZNF143 GTRD no Epithelial (MCF-7) 21581518
chr12 125124191 125125004 ZNF143 GTRD no Epithelial (MCF-7) 108069235
chr12 125124199 125124940 ZNF143 GTRD no Epithelial (MCF-7) 21581519
chr12 125124199 125124940 ZNF143 GTRD no Epithelial (MCF-7) 108069236
chr12 125124228 125124935 ZNF143 GTRD no Epithelial (MCF-7) 21581520
chr12 125124228 125124935 ZNF143 GTRD no Epithelial (MCF-7) 108069237
chr12 125124248 125124253 SP1 TRANSFAC yes 124402688
chr12 125124248 125124263 RFX5 JASPAR yes 124402689
Genes associated with rs548340357[chr12:125124252], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More