EnhancerDB
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  3. rs548468162[chr16:85435609]
Enhancers that have rs548468162[chr16:85435609]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85422125 85439595 enh4173
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Stomach Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs548468162[chr16:85435609]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85434436 85437321 TCF7L2 GTRD no Colon (HCT116) 21725068
chr16 85434460 85436059 ZNF143 GTRD no Epithelial (MCF-7) 21725069
chr16 85434466 85435785 TCF7L2 GTRD no Colon (HCT116) 21725070
chr16 85434536 85436196 TCF7L2 GTRD no Colon (HCT116) 21725072
chr16 85434626 85435925 TCF7L2 GTRD no Colon (HCT116) 21725073
chr16 85434673 85441574 ZNF143 GTRD no Epithelial (MCF-7) 21725074
chr16 85434683 85438585 TCF7L2 GTRD no Colon (HCT116) 21725075
chr16 85435264 85435706 TCF7L2 GTRD no Colon (HCT116) 21725076
chr16 85435536 85441658 ZNF143 GTRD no Epithelial (MCF-7) 21725077
chr16 85435570 85443981 ZNF143 GTRD no Epithelial (MCF-7) 21725078
chr16 85435585 85438727 ZNF143 GTRD no Epithelial (MCF-7) 21725079
chr16 85435599 85435611 NHLH1 JASPAR yes 12057545
chr16 85435600 85435610 NHLH1 JASPAR yes 12057546
chr16 85435609 85435628 REST JASPAR yes 12057547
Genes associated with rs548468162[chr16:85435609], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More