EnhancerDB
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  3. rs548622778[chr12:96634317]
Enhancers that have rs548622778[chr12:96634317]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 96582645 96638775 enh14921
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548622778[chr12:96634317]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 96634308 96634317 PITX3 JASPAR yes 123052028
chr12 96634308 96634318 GSC2 JASPAR yes 123052029
chr12 96634308 96634318 GSC JASPAR yes 123052030
chr12 96634309 96634317 OTX1 JASPAR yes 123052031
chr12 96634309 96634317 OTX2 JASPAR yes 123052032
chr12 96634309 96634317 RHOXF1 JASPAR yes 123052033
Genes associated with rs548622778[chr12:96634317], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More