EnhancerDB
  1. Home
  2. SNP
  3. rs549088961[chr1:2228970]
Enhancers that have rs549088961[chr1:2228970]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2213745 2234616 enh11425
Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Muscle (A673) Placenta Thyroid Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs549088961[chr1:2228970]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2226394 2230712 TCF7L2 GTRD no Colon (HCT116) 107801818
chr1 2226395 2235066 ZNF274 GTRD no Bone Marrow (K562) 107801819
chr1 2226395 2235066 ZNF274 GTRD no Bone Marrow (K562) 107801820
chr1 2228955 2228970 TFAP2A JASPAR yes 26233329
chr1 2228964 2228975 CEBPB JASPAR yes 26233331
chr1 2228965 2228976 CEBPA JASPAR yes 26233332
chr1 2228966 2228985 CTCF JASPAR yes 26233333
Genes associated with rs549088961[chr1:2228970], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More