EnhancerDB
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  3. rs549169012[chr1:172886444]
Enhancers that have rs549169012[chr1:172886444]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs549169012[chr1:172886444]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172885278 172886593 TCF7L2 GTRD no Colon (HCT116) 21350442
chr1 172885352 172886710 TCF7L2 GTRD no Colon (HCT116) 21350444
chr1 172885797 172886583 TCF7L2 GTRD no Colon (HCT116) 21350448
chr1 172885797 172886774 TCF7L2 GTRD no Colon (HCT116) 21350449
chr1 172885909 172886550 TCF7L2 GTRD no Colon (HCT116) 21350451
chr1 172885969 172886573 ZNF143 GTRD no Epithelial (MCF-7) 21350455
chr1 172886005 172886519 ZNF274 GTRD no Cervix (HeLa-S3) 21350456
chr1 172886065 172886449 ZNF143 GTRD no Epithelial (MCF-7) 21350457
chr1 172886437 172886450 ZBED1 JASPAR yes 33166035
chr1 172886438 172886451 ZBED1 JASPAR yes 33166037
Genes associated with rs549169012[chr1:172886444], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More