EnhancerDB
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  3. rs549288838[chr16:88298911]
Enhancers that have rs549288838[chr16:88298911]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88291992 88310485 enh16901
Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Muscle (Myotube) Lung Heart
Transcript factors that have rs549288838[chr16:88298911]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88296962 88299423 P63 GTRD no Skin (Keratinocyte) 108221871
chr16 88296991 88299886 P63 GTRD no Skin (Keratinocyte) 108221872
chr16 88298450 88298980 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735683
chr16 88298451 88298967 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735684
chr16 88298484 88299024 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21735686
chr16 88298511 88298975 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735688
chr16 88298514 88300105 TCF7L2 GTRD no Colon (HCT116) 21735690
chr16 88298514 88300105 TCF7L2 GTRD no Colon (HCT116) 108221873
chr16 88298557 88298953 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735693
chr16 88298563 88298943 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735694
chr16 88298565 88298925 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735695
chr16 88298582 88298912 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735697
chr16 88298654 88298974 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735700
chr16 88298664 88299004 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735701
chr16 88298682 88298946 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21735703
chr16 88298685 88298941 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735705
chr16 88298686 88298950 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21735706
chr16 88298768 88299704 TCF7L2 GTRD no Colon (HCT116) 21735707
chr16 88298768 88299704 TCF7L2 GTRD no Colon (HCT116) 108221874
chr16 88298790 88300178 TCF7L2 GTRD no Colon (HCT116) 21735708
chr16 88298790 88300178 TCF7L2 GTRD no Colon (HCT116) 108221875
chr16 88298799 88300292 TCF7L2 GTRD no Colon (HCT116) 21735709
chr16 88298799 88300292 TCF7L2 GTRD no Colon (HCT116) 108221876
chr16 88298801 88300385 TCF7L2 GTRD no Colon (HCT116) 21735710
chr16 88298801 88300385 TCF7L2 GTRD no Colon (HCT116) 108221877
chr16 88298826 88300904 ZNF143 GTRD no Epithelial (MCF-7) 21735711
chr16 88298826 88300904 ZNF143 GTRD no Epithelial (MCF-7) 108221878
chr16 88298830 88299652 TCF7L2 GTRD no Colon (HCT116) 21735712
chr16 88298830 88299652 TCF7L2 GTRD no Colon (HCT116) 108221879
chr16 88298846 88299369 TCF7L2 GTRD no Colon (HCT116) 21735713
chr16 88298846 88299369 TCF7L2 GTRD no Colon (HCT116) 108221880
chr16 88298902 88298916 TLX1 JASPAR yes 12271888
chr16 88298907 88298922 HNF4G JASPAR yes 12271889
chr16 88298910 88298922 INSM1 JASPAR yes 12271890
Genes associated with rs549288838[chr16:88298911], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More