EnhancerDB
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  3. rs549327696[chr1:203280236]
Enhancers that have rs549327696[chr1:203280236]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203277525 203300170 enh883
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs549327696[chr1:203280236]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203278869 203283583 ZNF143 GTRD no Epithelial (MCF-7) 21368068
chr1 203279864 203283218 ZNF143 GTRD no Epithelial (MCF-7) 21368074
chr1 203279903 203283339 ZNF143 GTRD no Epithelial (MCF-7) 21368075
chr1 203280080 203281631 ZNF143 GTRD no Epithelial (MCF-7) 21368076
chr1 203280129 203280375 ZNF143 GTRD no Epithelial (MCF-7) 21368077
chr1 203280133 203280752 ZNF143 GTRD no Epithelial (MCF-7) 21368078
chr1 203280223 203280240 RARA JASPAR yes 34615693
chr1 203280223 203280240 RXRA JASPAR yes 34615694
Genes associated with rs549327696[chr1:203280236], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More