EnhancerDB
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Enhancers that have rs549393000[chr12:54611827]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54604917 54618893 enh2376
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Ovary Blood (T-cell) Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus
chr12 54611719 54612027 vista13567
VISTA
Transcript factors that have rs549393000[chr12:54611827]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54611272 54611942 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037104
chr12 54611352 54611988 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037105
chr12 54611422 54611947 ZNF143 GTRD no Epithelial (MCF-7) 108037106
chr12 54611447 54611937 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037107
chr12 54611477 54611997 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037108
chr12 54611559 54611829 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037109
chr12 54611561 54612231 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037110
chr12 54611568 54611888 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037111
chr12 54611602 54611926 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037112
chr12 54611619 54611995 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037113
chr12 54611620 54611930 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037115
chr12 54611639 54611959 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21550420
chr12 54611639 54611959 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108037116
chr12 54611658 54611932 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21550421
chr12 54611658 54611932 POU2F2 UCSC Txn Factor no Conserved 108037117
chr12 54611658 54611932 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108037118
chr12 54611662 54611922 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037119
chr12 54611716 54611972 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037120
chr12 54611727 54611896 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21550422
chr12 54611727 54611896 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108037121
chr12 54611733 54612118 ZNF143 GTRD no Epithelial (MCF-7) 108037122
chr12 54611735 54612059 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037123
chr12 54611741 54611909 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21550423
chr12 54611741 54611909 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108037124
chr12 54611825 54611839 TLX1 JASPAR yes 82411917
chr12 54611825 54611839 TLX1 JASPAR yes 121029532
Genes associated with rs549393000[chr12:54611827], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More