EnhancerDB
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  3. rs550129083[chr17:39819228]
Enhancers that have rs550129083[chr17:39819228]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39816776 39838995 enh4409
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Blood (GM12878) Placenta Colon (HCT116) Uterus Thyroid Blood (Karpas-422) Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Thymus
Transcript factors that have rs550129083[chr17:39819228]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39817613 39822691 ZNF274 GTRD no Blood (GM12878) 21758082
chr17 39817613 39822691 ZNF274 GTRD no Blood (GM12878) 108259243
chr17 39817750 39822683 ZNF274 GTRD no Blood (GM12878) 21758083
chr17 39817750 39822683 ZNF274 GTRD no Blood (GM12878) 108259244
chr17 39819217 39819236 PAX5 JASPAR yes 54269993
chr17 39819222 39819235 ZBTB18 JASPAR yes 54269995
chr17 39819224 39819234 ID4 JASPAR yes 54269996
chr17 39819224 39819234 TCF3 JASPAR yes 54269997
chr17 39819224 39819234 TCF4 JASPAR yes 54269998
chr17 39819226 39819235 ZEB1 JASPAR yes 54269999
chr17 39819227 39819235 TBX5 JASPAR yes 54270000
Genes associated with rs550129083[chr17:39819228], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More