EnhancerDB
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  3. rs550533960[chr1:205450545]
Enhancers that have rs550533960[chr1:205450545]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205444631 205456855 enh61954
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Stomach Muscle (A673) Colon (HCT116) Breast Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs550533960[chr1:205450545]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205447430 205451678 ZNF143 GTRD no Epithelial (MCF-7) 21371887
chr1 205447430 205451678 ZNF143 GTRD no Epithelial (MCF-7) 107862188
chr1 205447544 205451629 TCF7L2 GTRD no Colon (HCT116) 21371892
chr1 205447544 205451629 TCF7L2 GTRD no Colon (HCT116) 107862189
chr1 205447570 205451434 ZNF274 GTRD no Bone Marrow (K562) 107862190
chr1 205447713 205451244 ZNF274 GTRD no Liver (HepG2) 107862191
chr1 205447956 205451653 TCF7L2 GTRD no Colon (HCT116) 21371894
chr1 205447956 205451653 TCF7L2 GTRD no Colon (HCT116) 107862192
chr1 205448383 205451050 ZNF274 GTRD no Bone Marrow (K562) 107862193
chr1 205448523 205450562 ZNF143 GTRD no Epithelial (MCF-7) 21371900
chr1 205448523 205450562 ZNF143 GTRD no Epithelial (MCF-7) 107862194
chr1 205448543 205450817 ZNF274 GTRD no Bone Marrow (K562) 107862195
chr1 205448631 205450853 ZNF274 GTRD no Bone Marrow (K562) 107862196
chr1 205448647 205451190 ZNF274 GTRD no Liver (HepG2) 107862197
chr1 205448715 205450842 ZNF274 GTRD no Liver (HepG2) 107862198
chr1 205448869 205451775 TCF7L2 GTRD no Colon (HCT116) 21371903
chr1 205448869 205451775 TCF7L2 GTRD no Colon (HCT116) 107862199
chr1 205448935 205451202 ZNF143 GTRD no Epithelial (MCF-7) 21371906
chr1 205448935 205451202 ZNF143 GTRD no Epithelial (MCF-7) 107862201
chr1 205448972 205451539 ZNF274 GTRD no Liver (HepG2) 107862202
chr1 205449095 205450877 TCF7L2 GTRD no Colon (HCT116) 21371908
chr1 205449095 205450877 TCF7L2 GTRD no Colon (HCT116) 107862204
chr1 205449246 205450900 ZNF274 GTRD no Bone Marrow (K562) 107862206
chr1 205449281 205450836 ZNF274 GTRD no Bone Marrow (K562) 107862208
chr1 205449328 205451006 ZNF274 GTRD no Liver (HepG2) 107862211
chr1 205449333 205450977 TCF7L2 GTRD no Colon (HCT116) 21371909
chr1 205449333 205450977 TCF7L2 GTRD no Colon (HCT116) 107862212
chr1 205449383 205450755 ZNF274 GTRD no Bone Marrow (K562) 107862216
chr1 205449385 205450808 ZNF274 GTRD no Bone Marrow (K562) 107862217
chr1 205449391 205451671 ZNF143 GTRD no Epithelial (MCF-7) 21371910
chr1 205449391 205451671 ZNF143 GTRD no Epithelial (MCF-7) 107862219
chr1 205449404 205450969 ZNF274 GTRD no Liver (HepG2) 107862221
chr1 205449421 205450898 TCF7L2 GTRD no Colon (HCT116) 21371911
chr1 205449421 205450898 TCF7L2 GTRD no Colon (HCT116) 107862223
chr1 205449426 205450563 TCF7L2 GTRD no Colon (HCT116) 21371912
chr1 205449426 205450563 TCF7L2 GTRD no Colon (HCT116) 107862224
chr1 205449444 205450767 ZNF274 GTRD no Liver (HepG2) 107862226
chr1 205449445 205450830 ZNF274 GTRD no Liver (HepG2) 107862227
chr1 205449446 205450967 ZNF274 GTRD no Liver (HepG2) 107862228
chr1 205449459 205450718 ZNF274 GTRD no Liver (HepG2) 107862229
chr1 205449482 205450849 TCF7L2 GTRD no Colon (HCT116) 21371913
chr1 205449482 205450849 TCF7L2 GTRD no Colon (HCT116) 107862230
chr1 205449489 205451641 ZNF274 GTRD no Liver (HepG2) 107862231
chr1 205449502 205450562 ZNF274 GTRD no Blood (GM12878) 107862233
chr1 205449535 205450835 ZNF274 GTRD no Liver (HepG2) 107862237
chr1 205449565 205450584 ZNF274 GTRD no Bone Marrow (K562) 107862238
chr1 205449581 205450631 ZNF274 GTRD no Bone Marrow (K562) 107862239
chr1 205449586 205450836 ZNF274 GTRD no Liver (HepG2) 107862240
chr1 205449613 205450552 ZNF274 GTRD no Liver (HepG2) 107862243
chr1 205449627 205451139 TCF7L2 GTRD no Colon (HCT116) 21371915
chr1 205449627 205451139 TCF7L2 GTRD no Colon (HCT116) 107862245
chr1 205449641 205451530 ZNF274 GTRD no Bone Marrow (K562) 107862247
chr1 205449653 205450848 ZNF274 GTRD no Bone Marrow (K562) 107862249
chr1 205449676 205450939 TCF7L2 GTRD no Colon (HCT116) 21371916
chr1 205449676 205450939 TCF7L2 GTRD no Colon (HCT116) 107862251
chr1 205449698 205450876 ZNF274 GTRD no Bone Marrow (K562) 107862254
chr1 205449857 205450556 ZNF274 GTRD no Bone Marrow (K562) 107862270
chr1 205449921 205450743 TCF7L2 GTRD no Colon (HCT116) 21371921
chr1 205449921 205450743 TCF7L2 GTRD no Colon (HCT116) 107862280
chr1 205449961 205450589 ZNF274 GTRD no Bone Marrow (K562) 107862283
chr1 205450079 205450678 TCF7L2 GTRD no Colon (HCT116) 21371922
chr1 205450079 205450678 TCF7L2 GTRD no Colon (HCT116) 107862292
chr1 205450102 205450667 TCF7L2 GTRD no Colon (HCT116) 21371923
chr1 205450102 205450667 TCF7L2 GTRD no Colon (HCT116) 107862295
chr1 205450107 205450909 ZNF274 GTRD no Liver (HepG2) 107862296
chr1 205450108 205450837 ZNF274 GTRD no Bone Marrow (K562) 107862297
chr1 205450142 205451021 ZNF143 GTRD no Epithelial (MCF-7) 21371925
Genes associated with rs550533960[chr1:205450545], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More