EnhancerDB
  1. Home
  2. SNP
  3. rs550621457[chr1:23968329]
Enhancers that have rs550621457[chr1:23968329]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 23931559 23968435 enh128
Bone Marrow (K562) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs550621457[chr1:23968329]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 23968327 23968337 ALX3 JASPAR yes 27452031
chr1 23968327 23968337 EMX1 JASPAR yes 27452032
chr1 23968327 23968337 HOXB2 JASPAR yes 27452033
chr1 23968327 23968337 HOXB3 JASPAR yes 27452034
chr1 23968327 23968337 MEOX2 JASPAR yes 27452035
chr1 23968327 23968337 MNX1 JASPAR yes 27452036
chr1 23968328 23968336 LMX1A JASPAR yes 27452037
chr1 23968328 23968336 LMX1B JASPAR yes 27452038
chr1 23968328 23968336 NKX6-1 JASPAR yes 27452039
chr1 23968328 23968336 NKX6-2 JASPAR yes 27452040
chr1 23968328 23968336 PDX1 JASPAR yes 27452041
chr1 23968328 23968336 VAX1 JASPAR yes 27452042
chr1 23968328 23968336 VAX2 JASPAR yes 27452043
chr1 23968328 23968336 VSX1 JASPAR yes 27452044
Genes associated with rs550621457[chr1:23968329], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More