EnhancerDB
  1. Home
  2. SNP
  3. rs551392627[chr17:53526773]
Enhancers that have rs551392627[chr17:53526773]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs551392627[chr17:53526773]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53526768 53526778 HOXC10 JASPAR yes 54852491
chr17 53526768 53526778 HOXD11 JASPAR yes 54852492
chr17 53526768 53526778 HOXD13 JASPAR yes 54852493
chr17 53526768 53526779 HOXA10 JASPAR yes 54852494
chr17 53526768 53526779 HOXC11 JASPAR yes 54852495
chr17 53526768 53526779 HOXC12 JASPAR yes 54852496
chr17 53526768 53526779 HOXC13 JASPAR yes 54852497
chr17 53526768 53526779 HOXD12 JASPAR yes 54852498
chr17 53526769 53526778 CDX1 JASPAR yes 54852499
chr17 53526769 53526780 CDX2 JASPAR yes 54852500
Genes associated with rs551392627[chr17:53526773], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More