EnhancerDB
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  3. rs552280105[chr17:78835340]
Enhancers that have rs552280105[chr17:78835340]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 78831119 78853255 enh4640
Skin (Keratinocyte) Brain (SK-N-SH) Blood (T-cell) Bone (Osteoblast) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr17 78835173 78835495 vista26356
VISTA
Transcript factors that have rs552280105[chr17:78835340]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 78835131 78835411 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108307919
chr17 78835131 78835411 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108307920
chr17 78835211 78835415 ZNF274 GTRD no Liver (HepG2) 108307921
chr17 78835228 78835795 TCF7L2 GTRD no Colon (HCT116) 21797439
chr17 78835228 78835795 TCF7L2 GTRD no Colon (HCT116) 108307922
chr17 78835237 78835554 GATA2 UCSC Txn Factor no Conserved 108307923
Genes associated with rs552280105[chr17:78835340], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More