EnhancerDB
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  3. rs552359429[chr12:54611984]
Enhancers that have rs552359429[chr12:54611984]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54604917 54618893 enh2376
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Ovary Blood (T-cell) Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus
chr12 54611719 54612027 vista13567
VISTA
Transcript factors that have rs552359429[chr12:54611984]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54611352 54611988 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037105
chr12 54611477 54611997 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037108
chr12 54611561 54612231 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037110
chr12 54611619 54611995 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037113
chr12 54611733 54612118 ZNF143 GTRD no Epithelial (MCF-7) 108037122
chr12 54611735 54612059 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108037123
chr12 54611976 54611985 THAP1 JASPAR yes 82411931
chr12 54611976 54611985 THAP1 JASPAR yes 121029546
Genes associated with rs552359429[chr12:54611984], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More