EnhancerDB
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  3. rs552429421[chr1:42126647]
Enhancers that have rs552429421[chr1:42126647]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
chr1 42126621 42126978 vista1339
VISTA
Transcript factors that have rs552429421[chr1:42126647]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42126572 42126902 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21325359
chr1 42126572 42126902 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802963
chr1 42126635 42126656 IRF1 JASPAR yes 28406582
chr1 42126635 42126656 IRF1 JASPAR yes 118279074
Genes associated with rs552429421[chr1:42126647], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More