EnhancerDB
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  3. rs552465560[chr3:13455639]
Enhancers that have rs552465560[chr3:13455639]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 13452848 13460198 enh7015
Prostate (PC-3) Cervix (HeLa-S3) Blood (T-cell) Esophagus Lung (A549) Stomach Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Thymus Epithelial (MCF-7)
chr3 13455554 13455885 vista40024
VISTA
Transcript factors that have rs552465560[chr3:13455639]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 13455467 13455805 SPI1 UCSC Txn Factor no Conserved 108528297
chr3 13455515 13455836 EBF1 UCSC Txn Factor no Conserved 108528298
chr3 13455626 13455647 IRF1 JASPAR yes 546952
chr3 13455626 13455647 IRF1 JASPAR yes 70940301
chr3 13455632 13455647 FOXP1 JASPAR yes 546953
chr3 13455632 13455647 FOXP1 JASPAR yes 70940302
chr3 13455632 13455653 IRF1 JASPAR yes 546954
chr3 13455632 13455653 IRF1 JASPAR yes 70940303
chr3 13455637 13455652 FOXP1 JASPAR yes 546955
chr3 13455637 13455652 FOXP1 JASPAR yes 70940304
chr3 13455637 13455658 IRF1 JASPAR yes 546956
chr3 13455637 13455658 IRF1 JASPAR yes 70940305
Genes associated with rs552465560[chr3:13455639], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More