EnhancerDB
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  3. rs552848357[chr12:46550979]
Enhancers that have rs552848357[chr12:46550979]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46542685 46564475 enh14673
Skin (Keratinocyte) Prostate (PC-3) Kidney Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Brain (SK-N-SH) Lung (A549) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs552848357[chr12:46550979]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46549427 46551942 ZNF274 GTRD no Cervix (HeLa-S3) 21540674
chr12 46549443 46552644 ZNF274 GTRD no Cervix (HeLa-S3) 21540676
chr12 46549452 46551820 ZNF274 GTRD no Cervix (HeLa-S3) 21540677
chr12 46549510 46552088 ZBTB33 GTRD no Lung (A549) 21540683
chr12 46550495 46551082 ZNF274 GTRD no Cervix (HeLa-S3) 21540711
chr12 46550702 46551768 TCF7L2 GTRD no Colon (HCT116) 21540712
chr12 46550753 46551689 TCF7L2 GTRD no Colon (HCT116) 21540713
chr12 46550758 46551462 TCF7L2 GTRD no Colon (HCT116) 21540714
chr12 46550853 46551751 TCF7L2 GTRD no Colon (HCT116) 21540715
chr12 46550963 46551418 TCF7L2 GTRD no Colon (HCT116) 21540716
chr12 46550967 46550981 ONECUT1 JASPAR yes 120599332
chr12 46550967 46550981 ONECUT2 JASPAR yes 120599333
chr12 46550969 46550980 DUX4 JASPAR yes 120599334
chr12 46550970 46550982 PBX1 JASPAR yes 120599335
chr12 46550976 46550991 FOXP1 JASPAR yes 120599336
Genes associated with rs552848357[chr12:46550979], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More