EnhancerDB
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  3. rs553424028[chr1:180824167]
Enhancers that have rs553424028[chr1:180824167]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 180815665 180825855 enh787
Bone Marrow (K562) Brain (SK-N-MC) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9) Stomach
Transcript factors that have rs553424028[chr1:180824167]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 180824154 180824169 HNF1A JASPAR yes 33540318
chr1 180824155 180824167 HNF1B JASPAR yes 33540319
chr1 180824155 180824168 HNF1B JASPAR yes 33540320
chr1 180824162 180824172 EMX1 JASPAR yes 33540321
chr1 180824162 180824172 EMX2 JASPAR yes 33540322
chr1 180824162 180824172 GSX1 JASPAR yes 33540323
chr1 180824162 180824172 LHX2 JASPAR yes 33540324
chr1 180824162 180824172 LHX6 JASPAR yes 33540325
chr1 180824162 180824172 MIXL1 JASPAR yes 33540326
chr1 180824162 180824172 MNX1 JASPAR yes 33540327
chr1 180824162 180824172 NOTO JASPAR yes 33540328
chr1 180824162 180824172 POU6F1 JASPAR yes 33540329
chr1 180824162 180824172 RAX JASPAR yes 33540330
chr1 180824163 180824171 ISX JASPAR yes 33540331
chr1 180824163 180824171 LMX1A JASPAR yes 33540332
chr1 180824163 180824171 LMX1B JASPAR yes 33540333
chr1 180824163 180824171 NKX6-1 JASPAR yes 33540334
chr1 180824163 180824171 NKX6-2 JASPAR yes 33540335
chr1 180824163 180824171 PRRX1 JASPAR yes 33540336
chr1 180824163 180824171 RAX2 JASPAR yes 33540337
chr1 180824163 180824171 SHOX JASPAR yes 33540338
chr1 180824163 180824171 UNCX JASPAR yes 33540339
chr1 180824163 180824171 VAX1 JASPAR yes 33540340
Genes associated with rs553424028[chr1:180824167], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More