EnhancerDB
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Enhancers that have rs553605671[chr1:201619120]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201600540 201629395 enh12525
Brain (SK-N-SH) Large Intestine Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Thyroid Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Uterus Heart
chr1 201618983 201619286 vista4568
VISTA
Transcript factors that have rs553605671[chr1:201619120]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201617825 201620050 ZNF274 GTRD no Bone Marrow (K562) 107856787
chr1 201617825 201620050 ZNF274 GTRD no Bone Marrow (K562) 107856788
chr1 201618799 201619448 ZNF143 GTRD no Epithelial (MCF-7) 107856789
chr1 201618799 201619448 ZNF143 GTRD no Epithelial (MCF-7) 107856790
chr1 201618801 201619313 ZNF143 GTRD no Epithelial (MCF-7) 107856791
chr1 201618919 201619458 SOX2 GTRD no Neural Stem Cells (H9) 107856792
chr1 201618919 201619458 SOX2 GTRD no Neural Stem Cells (H9) 107856793
chr1 201618925 201619595 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21365180
chr1 201618925 201619595 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856794
chr1 201618925 201619595 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856795
chr1 201618934 201619138 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856796
chr1 201619010 201619254 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856797
chr1 201619073 201619483 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21365181
chr1 201619073 201619483 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856798
chr1 201619073 201619483 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107856799
chr1 201619073 201619991 POLR2A UCSC Txn Factor no Conserved 107856800
chr1 201619073 201619991 POLR2A UCSC Txn Factor no Conserved 107856801
chr1 201619115 201619127 TFAP2A JASPAR yes 34517026
chr1 201619115 201619127 TFAP2A JASPAR yes 118432556
chr1 201619116 201619127 TFAP2A JASPAR yes 34517027
chr1 201619116 201619127 TFAP2A JASPAR yes 118432557
chr1 201619117 201619126 TFAP2A JASPAR yes 34517028
chr1 201619117 201619126 TFAP2A JASPAR yes 118432558
chr1 201619120 201619127 SP1 TRANSFAC yes 34517029
chr1 201619120 201619127 SP1 TRANSFAC yes 118432559
chr1 201619120 201619130 SP1 JASPAR yes 34517030
chr1 201619120 201619130 SP1 JASPAR yes 118432560
Genes associated with rs553605671[chr1:201619120], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More