EnhancerDB
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  3. rs553634888[chr1:17878892]
Enhancers that have rs553634888[chr1:17878892]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 17869605 17883659 enh26559
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs553634888[chr1:17878892]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 17878891 17878912 IRF1 JASPAR yes 27100710
chr1 17878892 17878896 NFE TRANSFAC yes 27100711
chr1 17878892 17878897 GATA1 TRANSFAC yes 27100712
chr1 17878892 17878898 GATA3 JASPAR yes 27100713
chr1 17878892 17878913 IRF1 JASPAR yes 27100714
Genes associated with rs553634888[chr1:17878892], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More