EnhancerDB
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  3. rs553789554[chr12:48218462]
Enhancers that have rs553789554[chr12:48218462]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 48214553 48225280 enh14688
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (A673) Heart
Transcript factors that have rs553789554[chr12:48218462]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 48218451 48218464 EOMES JASPAR yes 120719881
chr12 48218453 48218463 TBR1 JASPAR yes 120719883
chr12 48218453 48218464 TBX20 JASPAR yes 120719884
chr12 48218453 48218464 TBX2 JASPAR yes 120719885
chr12 48218454 48218464 TBX21 JASPAR yes 120719886
chr12 48218455 48218463 MGA JASPAR yes 120719887
chr12 48218455 48218463 TBX15 JASPAR yes 120719888
chr12 48218455 48218463 TBX1 JASPAR yes 120719889
chr12 48218455 48218463 TBX4 JASPAR yes 120719890
chr12 48218455 48218463 TBX5 JASPAR yes 120719891
Genes associated with rs553789554[chr12:48218462], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More