EnhancerDB
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Enhancers that have rs553796142[chr19:13171686]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13160145 13191995 enh17930
Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs553796142[chr19:13171686]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13170927 13171810 P63 GTRD no Skin (Keratinocyte) 108388622
chr19 13171008 13171777 P63 GTRD no Skin (Keratinocyte) 108388623
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 21850641
chr19 13171142 13173283 TCF7L2 GTRD no Colon (HCT116) 108388625
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 21850644
chr19 13171247 13173648 TCF7L2 GTRD no Colon (HCT116) 108388629
chr19 13171276 13171696 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850645
chr19 13171276 13171696 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388630
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 21850646
chr19 13171312 13172031 TCF7L2 GTRD no Colon (HCT116) 108388631
chr19 13171341 13171731 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850647
chr19 13171341 13171731 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388632
chr19 13171342 13171702 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850648
chr19 13171342 13171702 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388633
chr19 13171352 13171742 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850649
chr19 13171352 13171742 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388634
chr19 13171390 13171726 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850652
chr19 13171390 13171726 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388637
chr19 13171412 13171812 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850653
chr19 13171412 13171812 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388638
chr19 13171422 13171698 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850656
chr19 13171422 13171698 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388641
chr19 13171457 13171731 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850657
chr19 13171457 13171731 RXRA UCSC Txn Factor no Conserved 108388642
chr19 13171457 13171731 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388643
chr19 13171482 13171706 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850658
chr19 13171482 13171706 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388644
chr19 13171496 13171872 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21850659
chr19 13171496 13171872 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108388645
chr19 13171670 13171689 CTCF JASPAR yes 112506539
Genes associated with rs553796142[chr19:13171686], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More