EnhancerDB
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  3. rs553809847[chr1:230965454]
Enhancers that have rs553809847[chr1:230965454]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230955927 230966181 enh12773
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Placenta Breast Thyroid Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Uterus Heart
Transcript factors that have rs553809847[chr1:230965454]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230964723 230965540 ZNF143 GTRD no Epithelial (MCF-7) 21391771
chr1 230964776 230965943 ZNF143 GTRD no Epithelial (MCF-7) 21391772
chr1 230964788 230965999 ZNF143 GTRD no Epithelial (MCF-7) 21391774
chr1 230964799 230965911 ZNF143 GTRD no Epithelial (MCF-7) 21391775
chr1 230964846 230965509 ZNF143 GTRD no Epithelial (MCF-7) 21391776
chr1 230965427 230965849 ZNF143 GTRD no Epithelial (MCF-7) 21391781
chr1 230965444 230965958 ZNF143 GTRD no Epithelial (MCF-7) 21391782
chr1 230965447 230965461 ONECUT2 JASPAR yes 36065688
chr1 230965447 230965461 ONECUT3 JASPAR yes 36065689
Genes associated with rs553809847[chr1:230965454], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More