EnhancerDB
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  3. rs553979828[chr17:39699120]
Enhancers that have rs553979828[chr17:39699120]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39688905 39708275 enh17150
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs553979828[chr17:39699120]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39698423 39704417 ZNF274 GTRD no Liver (HepG2) 108258721
chr17 39698423 39704417 ZNF274 GTRD no Liver (HepG2) 108258722
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 21757673
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 108258723
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 108258724
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 21757674
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 108258725
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 108258726
chr17 39698974 39700981 ZBTB33 GTRD no Lung (A549) 21757675
chr17 39699107 39699120 POU2F2 JASPAR yes 54263134
chr17 39699108 39699120 POU3F1 JASPAR yes 54263135
chr17 39699108 39699120 POU3F2 JASPAR yes 54263136
Genes associated with rs553979828[chr17:39699120], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More