EnhancerDB
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  3. rs554025049[chr12:122223285]
Enhancers that have rs554025049[chr12:122223285]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122219767 122240055 enh2650
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs554025049[chr12:122223285]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122223131 122224827 ZNF274 GTRD no Bone Marrow (K562) 21579347
chr12 122223131 122224827 ZNF274 GTRD no Bone Marrow (K562) 108065461
chr12 122223179 122225333 ZNF274 GTRD no Bone Marrow (K562) 21579348
chr12 122223179 122225333 ZNF274 GTRD no Bone Marrow (K562) 108065462
chr12 122223179 122225333 ZNF274 GTRD no Bone Marrow (K562) 108065463
chr12 122223274 122223285 HOXA10 JASPAR yes 124246084
chr12 122223274 122223285 HOXC12 JASPAR yes 124246085
chr12 122223280 122225041 ZNF274 GTRD no Bone Marrow (K562) 21579349
chr12 122223280 122225041 ZNF274 GTRD no Bone Marrow (K562) 108065464
chr12 122223285 122223290 SP1 TRANSFAC yes 124246089
Genes associated with rs554025049[chr12:122223285], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More