EnhancerDB
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  3. rs554160214[chr1:3230640]
Enhancers that have rs554160214[chr1:3230640]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554160214[chr1:3230640]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3230395 3231174 TCF7L2 GTRD no Colon (HCT116) 107801846
chr1 3230572 3231882 TCF7L2 GTRD no Colon (HCT116) 107801847
chr1 3230628 3230643 ZIC3 JASPAR yes 26278502
chr1 3230628 3230643 ZIC4 JASPAR yes 26278503
chr1 3230629 3230643 ZIC1 JASPAR yes 26278504
chr1 3230630 3230645 ZIC3 JASPAR yes 26278505
chr1 3230631 3230645 GLIS2 JASPAR yes 26278506
chr1 3230631 3230645 ZIC1 JASPAR yes 26278507
chr1 3230634 3230644 SP1 JASPAR yes 26278508
chr1 3230634 3230644 ZNF740 JASPAR yes 26278509
chr1 3230635 3230645 SP1 JASPAR yes 26278510
chr1 3230635 3230645 ZNF740 JASPAR yes 26278511
chr1 3230636 3230646 SP1 JASPAR yes 26278512
chr1 3230636 3230646 ZNF740 JASPAR yes 26278513
chr1 3230637 3230647 ZNF740 JASPAR yes 26278514
Genes associated with rs554160214[chr1:3230640], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More