EnhancerDB
  1. Home
  2. SNP
  3. rs554167820[chr5:171574820]
Enhancers that have rs554167820[chr5:171574820]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs554167820[chr5:171574820]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171574804 171574821 RARA JASPAR yes 67767903
chr5 171574810 171574831 ZNF263 JASPAR yes 67767904
chr5 171574812 171574823 ESRRB JASPAR yes 67767905
chr5 171574812 171574825 NR2F1 JASPAR yes 67767906
chr5 171574813 171574828 LEF1 JASPAR yes 67767907
chr5 171574814 171574822 NR4A2 JASPAR yes 67767908
chr5 171574816 171574820 ESR1 TRANSFAC yes 67767909
Genes associated with rs554167820[chr5:171574820], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More