EnhancerDB
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  3. rs554711[chr1:185541728]
Enhancers that have rs554711[chr1:185541728]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 185522965 185545824 enh816
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Spleen Thymus Stomach
Transcript factors that have rs554711[chr1:185541728]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 185541720 185541731 STAT1 JASPAR yes 33823904
chr1 185541720 185541731 STAT3 JASPAR yes 33823905
chr1 185541721 185541732 CDX2 JASPAR yes 33823906
chr1 185541723 185541732 CDX1 JASPAR yes 33823910
chr1 185541723 185541733 HOXA13 JASPAR yes 33823911
chr1 185541723 185541733 HOXB13 JASPAR yes 33823912
chr1 185541723 185541733 HOXD13 JASPAR yes 33823913
chr1 185541725 185541740 PRDM1 JASPAR yes 33823914
Genes associated with rs554711[chr1:185541728], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More