EnhancerDB
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  3. rs554715542[chr1:16227328]
Enhancers that have rs554715542[chr1:16227328]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16216545 16234615 enh82
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Muscle (A673) Placenta Colon (HCT116) Thyroid Pancreas (Panc1) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Uterus Stomach
Transcript factors that have rs554715542[chr1:16227328]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16227319 16227328 NF-kappaB TRANSFAC yes 27013107
chr1 16227319 16227329 NFKB1 JASPAR yes 27013108
chr1 16227319 16227329 RELA JASPAR yes 27013109
chr1 16227319 16227329 REL JASPAR yes 27013110
chr1 16227319 16227330 NFKB1 JASPAR yes 27013111
Genes associated with rs554715542[chr1:16227328], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More