EnhancerDB
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  3. rs554720240[chr1:202060346]
Enhancers that have rs554720240[chr1:202060346]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs554720240[chr1:202060346]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 21366741
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 107857760
chr1 202054946 202060519 ZNF143 GTRD no Epithelial (MCF-7) 107857761
chr1 202060178 202060498 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367000
chr1 202060195 202060485 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21367001
chr1 202060204 202060474 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367002
chr1 202060207 202060437 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367003
chr1 202060214 202060464 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367004
chr1 202060218 202060408 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21367005
chr1 202060230 202060506 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367006
chr1 202060249 202060411 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367007
chr1 202060264 202060554 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21367008
chr1 202060287 202060391 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367009
chr1 202060316 202061099 ZNF143 GTRD no Epithelial (MCF-7) 21367010
chr1 202060321 202060387 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21367011
chr1 202060335 202060354 CTCF JASPAR yes 34552403
chr1 202060338 202060352 ZIC1 JASPAR yes 34552404
chr1 202060338 202060353 ZIC3 JASPAR yes 34552405
chr1 202060338 202060353 ZIC4 JASPAR yes 34552406
chr1 202060339 202060349 FIGLA JASPAR yes 34552407
chr1 202060339 202060349 MSC JASPAR yes 34552408
chr1 202060339 202060349 TCF3 JASPAR yes 34552409
chr1 202060340 202060349 SNAI2 JASPAR yes 34552410
chr1 202060341 202060346 USF2 TRANSFAC yes 34552411
chr1 202060345 202060359 JUN JASPAR yes 34552412
Genes associated with rs554720240[chr1:202060346], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More