EnhancerDB
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  3. rs554741920[chr1:9597240]
Enhancers that have rs554741920[chr1:9597240]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 9595905 9627275 enh49
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Thymus Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554741920[chr1:9597240]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 9597235 9597250 MEF2C JASPAR yes 26658535
chr1 9597238 9597253 FOXP1 JASPAR yes 26658536
chr1 9597239 9597254 FOXP1 JASPAR yes 26658537
chr1 9597239 9597260 IRF1 JASPAR yes 26658538
chr1 9597240 9597255 FOXP1 JASPAR yes 26658539
chr1 9597240 9597261 IRF1 JASPAR yes 26658540
Genes associated with rs554741920[chr1:9597240], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More