EnhancerDB
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  3. rs554798960[chr1:209606947]
Enhancers that have rs554798960[chr1:209606947]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209599449 209611412 enh12618
Bone Marrow (K562) Prostate (PC-3) Large Intestine Prostate (RWPE1) Bone (Osteoblast) Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr1 209606620 209606963 vista4906
VISTA
Transcript factors that have rs554798960[chr1:209606947]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209601620 209608746 POLR2A UCSC Txn Factor no Conserved 107865814
chr1 209606299 209606969 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375456
chr1 209606299 209606969 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865815
chr1 209606444 209607054 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375457
chr1 209606444 209607054 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865816
chr1 209606487 209607067 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375458
chr1 209606487 209607067 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865817
chr1 209606498 209607168 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375459
chr1 209606498 209607168 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865818
chr1 209606643 209606953 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375461
chr1 209606643 209606953 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865820
chr1 209606680 209607016 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375463
chr1 209606680 209607016 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865822
chr1 209606687 209606983 GATA3 UCSC Txn Factor no Conserved 107865823
chr1 209606703 209606953 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375465
chr1 209606703 209606953 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865825
chr1 209606704 209606964 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21375466
chr1 209606704 209606964 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107865826
chr1 209606804 209608167 AR GTRD no Prostate (PC-3) 21375468
chr1 209606804 209608167 AR GTRD no Prostate (PC-3) 107865828
chr1 209606914 209608339 ZNF274 GTRD no Blood (GM12878) 107865829
chr1 209606931 209608250 ZNF274 GTRD no Bone Marrow (K562) 21375469
chr1 209606931 209608250 ZNF274 GTRD no Bone Marrow (K562) 107865830
chr1 209606933 209606950 RXRA JASPAR yes 34975721
chr1 209606933 209606950 RXRA JASPAR yes 118448525
chr1 209606935 209606956 ZNF263 JASPAR yes 34975722
chr1 209606935 209606956 ZNF263 JASPAR yes 118448526
chr1 209606936 209606957 ZNF263 JASPAR yes 34975723
chr1 209606936 209606957 ZNF263 JASPAR yes 118448527
Genes associated with rs554798960[chr1:209606947], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More