EnhancerDB
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  3. rs554832892[chr12:52221409]
Enhancers that have rs554832892[chr12:52221409]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52218612 52224015 enh29576
Brain (SK-N-SH) Epithelial (MCF-7) Astrocyte Breast Neural Stem Cells (H9) Stomach
Transcript factors that have rs554832892[chr12:52221409]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52220370 52221526 ZNF143 GTRD no Epithelial (MCF-7) 21545754
chr12 52220477 52221680 ZNF143 GTRD no Epithelial (MCF-7) 21545755
chr12 52220702 52222527 ZNF143 GTRD no Epithelial (MCF-7) 21545756
chr12 52220786 52222717 ZNF143 GTRD no Epithelial (MCF-7) 21545757
chr12 52220861 52221633 ZNF143 GTRD no Epithelial (MCF-7) 21545758
chr12 52220957 52221500 ZNF143 GTRD no Epithelial (MCF-7) 21545759
chr12 52221021 52221798 ZNF143 GTRD no Epithelial (MCF-7) 21545760
chr12 52221042 52221429 ZNF143 GTRD no Epithelial (MCF-7) 21545761
chr12 52221405 52221413 HOXA5 JASPAR yes 120902340
chr12 52221407 52221423 POU4F2 JASPAR yes 120902341
chr12 52221407 52221423 POU4F3 JASPAR yes 120902342
chr12 52221409 52221423 POU4F1 JASPAR yes 120902343
Genes associated with rs554832892[chr12:52221409], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More