EnhancerDB
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  3. rs556052483[chr1:3453060]
Enhancers that have rs556052483[chr1:3453060]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3448190 3482098 enh11432
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs556052483[chr1:3453060]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3452284 3461704 ZNF274 GTRD no Liver (HepG2) 107801863
chr1 3453051 3453065 PLAG1 JASPAR yes 26293103
chr1 3453052 3453067 ZIC3 JASPAR yes 26293104
chr1 3453052 3453067 ZIC4 JASPAR yes 26293105
chr1 3453052 3453068 GLIS1 JASPAR yes 26293106
chr1 3453053 3453067 GLIS2 JASPAR yes 26293107
chr1 3453053 3453067 GLIS3 JASPAR yes 26293108
chr1 3453053 3453067 ZIC1 JASPAR yes 26293109
Genes associated with rs556052483[chr1:3453060], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More