EnhancerDB
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  3. rs556226575[chr1:40280679]
Enhancers that have rs556226575[chr1:40280679]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 40278465 40303035 enh11766
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Thymus Epithelial (MCF-7)
Transcript factors that have rs556226575[chr1:40280679]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 40280670 40280682 PKNOX1 JASPAR yes 28292346
chr1 40280670 40280682 PKNOX2 JASPAR yes 28292347
chr1 40280670 40280682 TGIF2 JASPAR yes 28292348
Genes associated with rs556226575[chr1:40280679], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More