EnhancerDB
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  3. rs556271124[chr6:41674562]
Enhancers that have rs556271124[chr6:41674562]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 41672005 41699742 enh9103
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs556271124[chr6:41674562]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540185
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540186
chr6 41672588 41676369 POLR2A UCSC Txn Factor no Conserved 108540187
chr6 41674546 41674566 RREB1 JASPAR yes 101667253
chr6 41674558 41674564 SP1 TRANSFAC yes 101667254
chr6 41674558 41674568 SP1 JASPAR yes 101667255
chr6 41674560 41674565 SP1 TRANSFAC yes 101667256
chr6 41674562 41674582 TBX19 JASPAR yes 101667257
Genes associated with rs556271124[chr6:41674562], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More