EnhancerDB
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  3. rs556299520[chr1:178541880]
Enhancers that have rs556299520[chr1:178541880]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178528505 178560595 enh755
Large Intestine Blood (OCI-LY7) Blood (GM12878) Stomach Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9) Heart
Transcript factors that have rs556299520[chr1:178541880]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178541568 178543784 ZNF274 GTRD no Blood (GM12878) 21352550
chr1 178541631 178543827 ZNF274 GTRD no Blood (GM12878) 21352551
chr1 178541647 178543651 ZNF274 GTRD no Blood (GM12878) 21352552
chr1 178541665 178543615 ZNF274 GTRD no Blood (GM12878) 21352553
chr1 178541729 178543828 ZNF274 GTRD no Blood (GM12878) 21352554
chr1 178541751 178543046 ZNF274 GTRD no Blood (GM12878) 21352555
chr1 178541781 178542141 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21352556
chr1 178541802 178543617 ZNF274 GTRD no Blood (GM12878) 21352557
chr1 178541842 178543649 ZNF274 GTRD no Blood (GM12878) 21352558
chr1 178541847 178543410 ZNF274 GTRD no Blood (GM12878) 21352559
chr1 178541848 178544445 STAT3 GTRD no Blood (OCI-LY7) 21352560
chr1 178541870 178543321 ZNF274 GTRD no Blood (GM12878) 21352561
chr1 178541873 178543395 ZNF274 GTRD no Blood (GM12878) 21352562
chr1 178541875 178543811 ZNF274 GTRD no Blood (GM12878) 21352563
chr1 178541876 178541880 NFE TRANSFAC yes 33424472
chr1 178541876 178541889 SMAD2 JASPAR yes 33424473
Genes associated with rs556299520[chr1:178541880], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More