EnhancerDB
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  3. rs556332423[chr1:201560675]
Enhancers that have rs556332423[chr1:201560675]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201559168 201580562 enh12524
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Breast Thyroid Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Pancreas Uterus Heart
Transcript factors that have rs556332423[chr1:201560675]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201558893 201560700 ZNF143 GTRD no Epithelial (MCF-7) 21365042
chr1 201558992 201560675 ZNF274 GTRD no Cervix (HeLa-S3) 21365044
chr1 201559232 201560944 ZNF143 GTRD no Epithelial (MCF-7) 21365050
chr1 201559310 201561209 ZNF143 GTRD no Epithelial (MCF-7) 21365058
chr1 201560240 201561230 ZNF143 GTRD no Epithelial (MCF-7) 21365070
chr1 201560294 201561237 ZNF143 GTRD no Epithelial (MCF-7) 21365071
chr1 201560296 201561196 ZNF143 GTRD no Epithelial (MCF-7) 21365072
chr1 201560311 201561224 ZNF143 GTRD no Epithelial (MCF-7) 21365073
chr1 201560672 201560681 HIC2 JASPAR yes 34510630
chr1 201560673 201560682 NFIX JASPAR yes 34510631
chr1 201560674 201560680 NFIC JASPAR yes 34510632
chr1 201560674 201560688 TLX1 JASPAR yes 34510633
chr1 201560675 201560689 TLX1 JASPAR yes 34510634
Genes associated with rs556332423[chr1:201560675], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More