EnhancerDB
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  3. rs55648538[chr17:11928294]
Enhancers that have rs55648538[chr17:11928294]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 11925628 11930034 enh32082
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Esophagus Astrocyte Stomach Lung (PC-9) Epithelial (MCF-7)
Transcript factors that have rs55648538[chr17:11928294]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 11928000 11928995 ZNF274 GTRD no Bone Marrow (K562) 108239264
chr17 11928126 11928767 ZNF274 GTRD no Liver (HepG2) 21742989
chr17 11928126 11928767 ZNF274 GTRD no Liver (HepG2) 108239265
chr17 11928166 11928742 ZNF274 GTRD no Bone Marrow (K562) 108239266
chr17 11928173 11929014 ZNF274 GTRD no Bone Marrow (K562) 108239267
chr17 11928180 11929038 ZNF274 GTRD no Bone Marrow (K562) 108239268
chr17 11928181 11928853 SOX2 GTRD no Neural Stem Cells (H9) 108239269
chr17 11928191 11928652 ZNF143 GTRD no Epithelial (MCF-7) 21742990
chr17 11928191 11928652 ZNF143 GTRD no Epithelial (MCF-7) 108239270
chr17 11928201 11928917 ZNF274 GTRD no Liver (HepG2) 21742991
chr17 11928201 11928917 ZNF274 GTRD no Liver (HepG2) 108239271
chr17 11928224 11928878 ZNF274 GTRD no Bone Marrow (K562) 108239272
chr17 11928226 11928534 ZNF143 GTRD no Epithelial (MCF-7) 21742992
chr17 11928226 11928534 ZNF143 GTRD no Epithelial (MCF-7) 108239273
chr17 11928241 11928812 SOX2 GTRD no Neural Stem Cells (H9) 108239274
chr17 11928241 11929050 ZNF274 GTRD no Bone Marrow (K562) 108239275
chr17 11928247 11928810 ZNF274 GTRD no Bone Marrow (K562) 108239276
chr17 11928249 11929028 ZNF274 GTRD no Bone Marrow (K562) 108239277
chr17 11928266 11928755 ZNF143 GTRD no Epithelial (MCF-7) 21742993
chr17 11928266 11928755 ZNF143 GTRD no Epithelial (MCF-7) 108239278
chr17 11928267 11928772 ZNF274 GTRD no Liver (HepG2) 21742994
chr17 11928267 11928772 ZNF274 GTRD no Liver (HepG2) 108239279
chr17 11928277 11928694 ZNF143 GTRD no Epithelial (MCF-7) 21742995
chr17 11928277 11928694 ZNF143 GTRD no Epithelial (MCF-7) 108239280
chr17 11928278 11928878 ZNF274 GTRD no Liver (HepG2) 21742996
chr17 11928278 11928878 ZNF274 GTRD no Liver (HepG2) 108239281
chr17 11928280 11928799 ZNF274 GTRD no Bone Marrow (K562) 108239282
chr17 11928280 11928863 ZNF274 GTRD no Bone Marrow (K562) 108239283
chr17 11928283 11928917 ZNF274 GTRD no Bone Marrow (K562) 108239284
chr17 11928288 11928297 HIC2 JASPAR yes 53151240
chr17 11928288 11928820 ZNF274 GTRD no Bone Marrow (K562) 108239285
chr17 11928289 11928298 NFIX JASPAR yes 53151241
chr17 11928290 11928296 NFIC JASPAR yes 53151242
chr17 11928290 11928671 ZNF274 GTRD no Bone Marrow (K562) 108239286
Genes associated with rs55648538[chr17:11928294], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 11880756 11900827 - ZNF18 ENSG00000154957.9 11900827 27467 Lung 0.251881 15451