EnhancerDB
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  3. rs556551379[chr17:80238866]
Enhancers that have rs556551379[chr17:80238866]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80234785 80270055 enh4646
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs556551379[chr17:80238866]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80238860 80238872 FOXC2 JASPAR yes 56356994
chr17 80238865 80238876 CDX2 JASPAR yes 56356995
chr17 80238866 80238887 IRF1 JASPAR yes 56356996
Genes associated with rs556551379[chr17:80238866], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More