EnhancerDB
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  3. rs556558438[chr1:172880555]
Enhancers that have rs556558438[chr1:172880555]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172860479 172890491 enh12377
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs556558438[chr1:172880555]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172880545 172880560 HNF1A JASPAR yes 33165081
chr1 172880546 172880556 LHX6 JASPAR yes 33165082
chr1 172880546 172880559 HNF1B JASPAR yes 33165083
chr1 172880547 172880563 POU4F2 JASPAR yes 33165084
chr1 172880547 172880563 POU4F3 JASPAR yes 33165085
chr1 172880548 172880558 PAX3 JASPAR yes 33165086
chr1 172880548 172880558 PAX7 JASPAR yes 33165087
chr1 172880554 172880567 DUXA JASPAR yes 33165088
Genes associated with rs556558438[chr1:172880555], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More