EnhancerDB
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  3. rs55656553[chr17:38480006]
Enhancers that have rs55656553[chr17:38480006]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38463228 38485935 enh4408
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Blood (T-cell) Heart
chr17 38477236 38480096 vista24701
VISTA
Transcript factors that have rs55656553[chr17:38480006]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38479988 38480006 RARA JASPAR yes 21233974
chr17 38479988 38480006 RARA JASPAR yes 54205455
chr17 38479995 38480010 NR2C2 JASPAR yes 21233976
chr17 38479995 38480010 NR2C2 JASPAR yes 54205457
chr17 38479997 38480011 PLAG1 JASPAR yes 21233977
chr17 38479997 38480011 PLAG1 JASPAR yes 54205458
chr17 38479999 38480009 SP1 JASPAR yes 21233978
chr17 38479999 38480009 SP1 JASPAR yes 54205459
chr17 38480002 38480012 MZF1 JASPAR yes 21233979
chr17 38480002 38480012 SP1 JASPAR yes 21233980
chr17 38480002 38480012 ZNF740 JASPAR yes 21233981
chr17 38480002 38480012 MZF1 JASPAR yes 54205460
chr17 38480002 38480012 SP1 JASPAR yes 54205461
chr17 38480002 38480012 ZNF740 JASPAR yes 54205462
chr17 38480003 38480013 SP1 JASPAR yes 21233982
chr17 38480003 38480013 ZNF740 JASPAR yes 21233983
chr17 38480003 38480013 SP1 JASPAR yes 54205463
chr17 38480003 38480013 ZNF740 JASPAR yes 54205464
chr17 38480005 38480019 PLAG1 JASPAR yes 21233984
chr17 38480005 38480019 PLAG1 JASPAR yes 54205465
Genes associated with rs55656553[chr17:38480006], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More