EnhancerDB
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  3. rs556994988[chr1:200341132]
Enhancers that have rs556994988[chr1:200341132]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200325645 200353015 enh869
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Blood (OCI-LY7) Placenta Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs556994988[chr1:200341132]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200340931 200341714 TCF7L2 GTRD no Colon (HCT116) 107855097
chr1 200341003 200341511 GATA3 UCSC Txn Factor no Conserved 107855098
chr1 200341004 200341500 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21363332
chr1 200341004 200341500 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107855099
chr1 200341005 200341643 EP300 UCSC Txn Factor no Conserved 107855100
chr1 200341005 200341643 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855101
chr1 200341036 200341606 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21363333
chr1 200341036 200341606 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107855102
chr1 200341036 200341860 TCF7L2 GTRD no Colon (HCT116) 107855103
chr1 200341038 200341634 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21363334
chr1 200341038 200341634 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107855104
chr1 200341041 200341511 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21363335
chr1 200341041 200341511 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107855105
chr1 200341055 200341662 TCF7L2 GTRD no Colon (HCT116) 107855106
chr1 200341063 200341614 TCF12 UCSC Txn Factor no Conserved 107855107
chr1 200341063 200341614 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855108
chr1 200341065 200341568 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21363336
chr1 200341065 200341568 FOXA2 UCSC Txn Factor no Conserved 107855109
chr1 200341065 200341568 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107855110
chr1 200341077 200341597 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855111
chr1 200341091 200341654 TCF7L2 GTRD no Colon (HCT116) 107855112
chr1 200341105 200341589 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855113
chr1 200341121 200341597 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855114
chr1 200341126 200341506 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21363337
chr1 200341126 200341506 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107855115
chr1 200341127 200341138 FOXA1 JASPAR yes 34441167
chr1 200341127 200341142 FOXA1 JASPAR yes 34441168
chr1 200341128 200341140 FOXC2 JASPAR yes 34441169
chr1 200341131 200341140 SRY JASPAR yes 34441170
chr1 200341131 200341555 BCL3 UCSC Txn Factor no Conserved 107855116
chr1 200341131 200341555 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107855117
Genes associated with rs556994988[chr1:200341132], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More