EnhancerDB
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  3. rs55749462[chr6:17713954]
Enhancers that have rs55749462[chr6:17713954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 17712332 17727615 enh23084
Bone Marrow (K562) Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myotube) Uterus Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs55749462[chr6:17713954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 17713946 17713957 CDX2 JASPAR yes 100395751
chr6 17713947 17713958 HOXA10 JASPAR yes 100395752
chr6 17713947 17713958 HOXC11 JASPAR yes 100395753
chr6 17713947 17713958 HOXC12 JASPAR yes 100395754
chr6 17713947 17713958 HOXD12 JASPAR yes 100395755
chr6 17713948 17713957 CDX1 JASPAR yes 100395756
chr6 17713948 17713958 HOXA13 JASPAR yes 100395757
chr6 17713948 17713958 HOXC10 JASPAR yes 100395758
chr6 17713948 17713958 HOXD11 JASPAR yes 100395759
chr6 17713953 17713962 SRY JASPAR yes 100395760
Genes associated with rs55749462[chr6:17713954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More