EnhancerDB
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  3. rs557558909[chr12:96589334]
Enhancers that have rs557558909[chr12:96589334]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 96582645 96638775 enh14921
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs557558909[chr12:96589334]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 96589018 96589554 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108053067
chr12 96589096 96589496 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053068
chr12 96589105 96589645 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108053069
chr12 96589120 96589710 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053070
chr12 96589215 96589482 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053071
chr12 96589221 96589737 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053072
chr12 96589229 96589665 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053073
chr12 96589236 96589672 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053074
chr12 96589258 96589668 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053075
chr12 96589261 96589781 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053076
chr12 96589267 96589683 RELA UCSC Txn Factor no Conserved 108053077
chr12 96589269 96589649 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053078
chr12 96589279 96589719 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108053079
chr12 96589281 96589645 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053080
chr12 96589285 96589721 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108053081
chr12 96589289 96589645 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21567594
chr12 96589289 96589645 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108053082
chr12 96589291 96589695 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21567595
chr12 96589291 96589695 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108053083
chr12 96589295 96589565 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21567596
chr12 96589295 96589565 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108053084
chr12 96589296 96589672 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21567597
chr12 96589296 96589672 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108053085
chr12 96589299 96589629 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053086
chr12 96589304 96589768 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21567598
chr12 96589304 96589768 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108053087
chr12 96589310 96589640 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21567599
chr12 96589310 96589640 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108053088
chr12 96589319 96589340 IRF1 JASPAR yes 123045395
chr12 96589320 96589636 EBF1 UCSC Txn Factor no Conserved 108053089
chr12 96589321 96589336 STAT2 JASPAR yes 123045396
chr12 96589321 96589717 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21567600
chr12 96589321 96589717 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108053090
chr12 96589323 96589335 IRF1 JASPAR yes 123045397
chr12 96589324 96589338 GATA2 JASPAR yes 123045398
chr12 96589324 96589680 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053091
chr12 96589328 96589336 GATA5 JASPAR yes 123045400
chr12 96589333 96589717 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21567601
chr12 96589333 96589717 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108053092
Genes associated with rs557558909[chr12:96589334], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More