EnhancerDB
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  3. rs557563353[chr1:23958658]
Enhancers that have rs557563353[chr1:23958658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 23931559 23968435 enh128
Bone Marrow (K562) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs557563353[chr1:23958658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 23957061 23961584 ZNF274 GTRD no Blood (GM12878) 107802433
chr1 23958656 23958667 CDX2 JASPAR yes 27450645
chr1 23958657 23958668 HOXA10 JASPAR yes 27450646
chr1 23958657 23958668 HOXD12 JASPAR yes 27450647
chr1 23958658 23958667 CDX1 JASPAR yes 27450648
chr1 23958658 23958668 HOXA13 JASPAR yes 27450649
chr1 23958658 23958668 HOXB13 JASPAR yes 27450650
chr1 23958658 23958668 HOXD13 JASPAR yes 27450651
Genes associated with rs557563353[chr1:23958658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More